Biomart

Verified Integration

Author: @spawning•Category: ServerApplication

GitHub Repository

JSON-RPC 2.0

Protocol Standard

Sub-second

Execution Latency

Active

Operational Status

Client Configuration

— Connect Biomart to Claude Desktop or Cursor in seconds

{
  "mcpServers": {
    "biomart": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-biomart"
      ],
      "env": {}
    }
  }
}

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).

Architecture & Capabilities

System Overview

Interfaces with Biomart databases using the Model Context Protocol (MCP) to provide biological data to Large Language Models.

Indexed Date

7/22/2026

License

Open Source

Protocol Layer

stdio / SSE RPC

Frequently Asked Questions

Architecture and operational details for Biomart

You can use it to list available marts and datasets, explore attributes and filters, query Biomart for specific data, and convert between different biological identifiers (e.g., gene symbols to Ensembl IDs).

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