BioOntology

Verified Integration

Author: @specifying•Category: ServerApplication

GitHub Repository

JSON-RPC 2.0

Protocol Standard

Sub-second

Execution Latency

Active

Operational Status

Client Configuration

— Connect BioOntology to Claude Desktop or Cursor in seconds

{
  "mcpServers": {
    "bioontology": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-bioontology"
      ],
      "env": {}
    }
  }
}

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).

Architecture & Capabilities

System Overview

Provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.

Indexed Date

7/22/2026

License

Open Source

Protocol Layer

stdio / SSE RPC

Frequently Asked Questions

Architecture and operational details for BioOntology

The server supports over 1,200 ontologies from BioPortal, including major medical/clinical (NCIT, DOID, HP, MESH) and biological/chemical (GO, UBERON, CHEBI) domains, and many more specialized ontologies.

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