BioSamples

Verified Integration

Author: @spawning•Category: ServerApplication

GitHub Repository

JSON-RPC 2.0

Protocol Standard

Sub-second

Execution Latency

Active

Operational Status

Client Configuration

— Connect BioSamples to Claude Desktop or Cursor in seconds

{
  "mcpServers": {
    "biosamples": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-biosamples"
      ],
      "env": {}
    }
  }
}

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).

Architecture & Capabilities

System Overview

Integrates EBI BioSamples data, enabling AI agents and MCP clients to access biological sample information.

Indexed Date

7/22/2026

License

Open Source

Protocol Layer

stdio / SSE RPC

Frequently Asked Questions

Architecture and operational details for BioSamples

Yes, when connected through the Pipeworx gateway, you can use natural language queries (e.g., via `ask_pipeworx`) to retrieve BioSamples data. The gateway automatically selects the right tool and arguments.

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