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Deepmap

Verified Integration
Author: @Saurabhsing21•Category: ServerApplication
GitHub Repository
JSON-RPC 2.0
Protocol Standard
Sub-second
Execution Latency
Active
Operational Status
Tags:#Claude#Search#Database#API#Git#AI#GitHub#Node.js

Client Configuration

— Connect Deepmap to Claude Desktop or Cursor in seconds
{
  "mcpServers": {
    "deepmap": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-deepmap"
      ],
      "env": {}
    }
  }
}
Paste into ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).
Architecture & Capabilities

System Overview

Provides AI agents with structured access to Broad Institute's DepMap CRISPR datasets for high-performance functional genomics analysis.

Indexed Date

7/23/2026

License

Open Source

Protocol Layer

stdio / SSE RPC

Frequently Asked Questions

Architecture and operational details for Deepmap

Deepmap is an AI agent tool that provides Large Language Models (LLMs) with direct, structured access to Broad Institute's DepMap CRISPR datasets. It enables high-performance functional genomics analysis, specifically for 'Therapeutic Target Evidence Collection' across over 1,000 cancer cell lines.

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