Ensembl
Verified IntegrationClient Configuration
— Connect Ensembl to Claude Desktop or Cursor in seconds{
"mcpServers": {
"ensembl": {
"command": "npx",
"args": [
"-y",
"@modelcontextprotocol/server-ensembl"
],
"env": {}
}
}
}~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).System Overview
Provides large language models with access to the Ensembl genomics database for querying genomic data, gene information, sequences, and variants.
7/22/2026
Open Source
stdio / SSE RPC
Frequently Asked Questions
Architecture and operational details for Ensembl
You can ask questions like: 'What is the BRAF gene and where is it located?', 'Show me variants in the TP53 gene region', or 'Get the DNA sequence for chromosome 17 from position 7565096 to 7590856'.
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