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Galaxy

Verified Integration
Author: @galaxyproject•Category: ServerApplication
GitHub Repository
JSON-RPC 2.0
Protocol Standard
Sub-second
Execution Latency
Active
Operational Status
Tags:#Claude#Search#Database#API#Python#Git#Filesystem#AI#GitHub#Node.js#Automation

Client Configuration

— Connect Galaxy to Claude Desktop or Cursor in seconds
{
  "mcpServers": {
    "galaxy": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {}
    }
  }
}
Paste into ~/Library/Application Support/Claude/claude_desktop_config.json (macOS) or %APPDATA%\Claude\claude_desktop_config.json (Windows).
Architecture & Capabilities

System Overview

Connects AI assistants and other clients to the Galaxy bioinformatics platform, enabling interaction with tools, workflows, histories, and data.

Indexed Date

7/23/2026

License

Open Source

Protocol Layer

stdio / SSE RPC

Frequently Asked Questions

Architecture and operational details for Galaxy

The Galaxy MCP (Model Context Protocol) Server enables AI assistants and other client applications to programmatically connect and interact with the Galaxy bioinformatics platform, accessing its tools, workflows, histories, and data.

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